Slides

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Course Introduction

Genome Basics

Databases and Software

Git and GitHub

Linux and HPC Cluster Basics

Sequencing Technologies

Introduction to R

Sequence Alignments and Similarity Searching

Programming in R

Multiple Alignments

Short Read Alignments

R on HPC Systems

NGS Analysis Basics

Analysis of Gene Expression Data

Introduction to NGS Workflows

Cluster Analysis

Functional Enrichment Analysis

ChIP-Seq Analysis

VAR-Seq Analysis

Project Data Management

Graphics and Data Visualization in R

Building R packages

Tidyverse and Some SQLite

Review of Data Analysis Workflows

Structure and Auto-Generation of CWL Parameter Files

Additional Slide Shows

Final Discussion

Last modified 2025-05-26: some edits (1747f3b)