Slides

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Course Introduction

Genome Basics

Databases and Software

Git and GitHub

Linux and HPC Cluster Basics

Sequencing Technologies

Introduction to R

Sequence Alignments and Similarity Searching

Programming in R

Multiple Alignments

Short Read Alignments

R on HPC Systems

NGS Analysis Basics

Analysis of Gene Expression Data

Introduction to NGS Workflows

ChIP-Seq Overview

Functional Enrichment Analysis

Cluster Analysis

Project Data Management

Graphics and Data Visualization in R

Building R packages

Environments dplyr, tidyr and some SQLite

Review of Data Analysis Workflows

Final Discussion

Additional Slide Shows

Last modified 2022-03-21: some edits (76115cf94)