sessionInfo()
## R version 3.2.2 (2015-08-14) ## Platform: x86_64-pc-linux-gnu (64-bit) ## Running under: CentOS Linux 7 (Core) ## ## locale: ## [1] C ## ## attached base packages: ## [1] parallel stats graphics utils datasets grDevices methods base ## ## other attached packages: ## [1] DrugVsDisease_2.10.2 qvalue_2.2.2 cMap2data_1.6.0 DrugVsDiseasedata_1.6.0 ## [5] GEOquery_2.36.0 ArrayExpress_1.30.1 biomaRt_2.26.1 limma_3.26.5 ## [9] affy_1.48.0 Biobase_2.30.0 BiocGenerics_0.16.1 ChemmineR_2.22.3 ## [13] reshape2_1.4.1 ggplot2_2.0.0 longevityTools_1.0.6 BiocStyle_1.8.0 ## ## loaded via a namespace (and not attached): ## [1] SummarizedExperiment_1.0.2 oligo_1.34.2 splines_3.2.2 ## [4] colorspace_1.2-6 htmltools_0.3 stats4_3.2.2 ## [7] yaml_2.1.13 XML_3.98-1.3 DBI_0.3.1 ## [10] affyio_1.40.0 foreach_1.4.3 plyr_1.8.3 ## [13] stringr_1.0.0 zlibbioc_1.16.0 Biostrings_2.38.1 ## [16] munsell_0.4.3 gtable_0.1.2 codetools_0.2-14 ## [19] evaluate_0.8 labeling_0.3 knitr_1.12.3 ## [22] ff_2.2-13 IRanges_2.4.3 BiocInstaller_1.20.1 ## [25] GenomeInfoDb_1.6.3 AnnotationDbi_1.32.3 preprocessCore_1.32.0 ## [28] Rcpp_0.12.3 scales_0.3.0 formatR_1.2.1 ## [31] S4Vectors_0.8.7 XVector_0.10.0 affxparser_1.42.0 ## [34] bit_1.1-12 oligoClasses_1.32.0 rjson_0.2.15 ## [37] digest_0.6.9 stringi_1.0-1 GenomicRanges_1.22.1 ## [40] grid_3.2.2 tools_3.2.2 bitops_1.0-6 ## [43] magrittr_1.5 RCurl_1.95-4.7 RSQLite_1.0.0 ## [46] rmarkdown_0.9.2 iterators_1.0.8