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Longevity Tools
Longevity Genomics
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Overview
Introduction
Current Projects
Getting Started
Downloads
Download of Analysis Results
Software
longevityToolsOverview
1. Introduction
2. Getting Started
3. Overview of object clases, methods and functions
4. Workflow vignettes
5. Funding
6. Version information
7. References
longevityTools_eQTL
1. Introduction
2. General Analytical Approach
3. Getting Started
4. Setup of working environment
5. Sample data from GTEx
6. Utilities
7. SNP clumping using PLINK
8. Funding
9. Version information
10. References
longevityTools_eDRUG
1. Introduction
2. Getting Started
3. Setup of working environment
4. Data downloads
5. Pre-processing of CEL files
6. DEG analysis with `limma`
7. Connectivity maps enrichment analysis
8. Age-drug network analysis
9. Age-disease network analysis
10. Funding
11. Version information
12. References
longevityDrugs
1. Introduction
2. Getting Started
3. Load database
4. Query database
5. Funding
6. Version information
7. References
Funding
Funding
Load database
mypath
<-
system.file
(
"extdata"
,
"cmap.db"
,
package
=
"longevityDrugs"
)
conn
<-
initDb
(
mypath
)