## R version 3.4.4 (2018-03-15)
## Platform: x86_64-pc-linux-gnu (64-bit)
## Running under: Ubuntu 16.04.4 LTS
##
## Matrix products: default
## BLAS: /usr/lib/libblas/libblas.so.3.6.0
## LAPACK: /usr/lib/lapack/liblapack.so.3.6.0
##
## locale:
## [1] LC_CTYPE=en_US.UTF-8 LC_NUMERIC=C LC_TIME=en_US.UTF-8
## [4] LC_COLLATE=en_US.UTF-8 LC_MONETARY=en_US.UTF-8 LC_MESSAGES=en_US.UTF-8
## [7] LC_PAPER=en_US.UTF-8 LC_NAME=C LC_ADDRESS=C
## [10] LC_TELEPHONE=C LC_MEASUREMENT=en_US.UTF-8 LC_IDENTIFICATION=C
##
## attached base packages:
## [1] stats4 parallel methods stats graphics grDevices utils datasets base
##
## other attached packages:
## [1] DESeq2_1.18.0 ape_5.1 ggplot2_2.2.1
## [4] systemPipeR_1.12.0 ShortRead_1.36.1 GenomicAlignments_1.14.0
## [7] SummarizedExperiment_1.8.0 DelayedArray_0.4.0 matrixStats_0.52.2
## [10] Biobase_2.38.0 BiocParallel_1.12.0 Rsamtools_1.30.0
## [13] Biostrings_2.46.0 XVector_0.18.0 GenomicRanges_1.30.3
## [16] GenomeInfoDb_1.14.0 IRanges_2.12.0 S4Vectors_0.16.0
## [19] BiocGenerics_0.24.0 BiocStyle_2.6.1
##
## loaded via a namespace (and not attached):
## [1] nlme_3.1-137 Category_2.44.0 bitops_1.0-6 bit64_0.9-7
## [5] RColorBrewer_1.1-2 progress_1.1.2 rprojroot_1.3-2 Rgraphviz_2.22.0
## [9] tools_3.4.4 backports_1.1.1 R6_2.2.2 rpart_4.1-13
## [13] Hmisc_4.0-3 DBI_0.7 lazyeval_0.2.1 colorspace_1.3-2
## [17] nnet_7.3-12 gridExtra_2.3 prettyunits_1.0.2 RMySQL_0.10.13
## [21] bit_1.1-12 compiler_3.4.4 sendmailR_1.2-1 graph_1.56.0
## [25] htmlTable_1.9 labeling_0.3 rtracklayer_1.38.3 scales_0.5.0
## [29] checkmate_1.8.5 BatchJobs_1.6 genefilter_1.60.0 RBGL_1.54.0
## [33] stringr_1.2.0 digest_0.6.12 foreign_0.8-70 rmarkdown_1.9
## [37] AnnotationForge_1.20.0 base64enc_0.1-3 pkgconfig_2.0.1 htmltools_0.3.6
## [41] limma_3.34.0 htmlwidgets_0.9 rlang_0.2.0 RSQLite_2.0
## [45] BBmisc_1.11 GOstats_2.44.0 hwriter_1.3.2 acepack_1.4.1
## [49] RCurl_1.95-4.8 magrittr_1.5 Formula_1.2-2 GO.db_3.4.2
## [53] GenomeInfoDbData_0.99.1 Matrix_1.2-14 Rcpp_0.12.13 munsell_0.4.3
## [57] stringi_1.1.5 yaml_2.1.14 edgeR_3.20.1 zlibbioc_1.24.0
## [61] fail_1.3 plyr_1.8.4 grid_3.4.4 blob_1.1.0
## [65] lattice_0.20-35 splines_3.4.4 GenomicFeatures_1.30.0 annotate_1.56.0
## [69] locfit_1.5-9.1 knitr_1.20 pillar_1.2.1 rjson_0.2.15
## [73] geneplotter_1.56.0 codetools_0.2-15 biomaRt_2.34.0 XML_3.98-1.9
## [77] evaluate_0.10.1 latticeExtra_0.6-28 data.table_1.10.4-3 gtable_0.2.0
## [81] assertthat_0.2.0 xtable_1.8-2 survival_2.42-3 tibble_1.4.2
## [85] pheatmap_1.0.8 AnnotationDbi_1.40.0 memoise_1.1.0 cluster_2.0.7-1
## [89] brew_1.0-6 GSEABase_1.40.0
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