## R version 3.4.4 (2018-03-15)
## Platform: x86_64-pc-linux-gnu (64-bit)
## Running under: Ubuntu 16.04.4 LTS
##
## Matrix products: default
## BLAS: /usr/lib/libblas/libblas.so.3.6.0
## LAPACK: /usr/lib/lapack/liblapack.so.3.6.0
##
## locale:
## [1] LC_CTYPE=en_US.UTF-8 LC_NUMERIC=C LC_TIME=en_US.UTF-8
## [4] LC_COLLATE=en_US.UTF-8 LC_MONETARY=en_US.UTF-8 LC_MESSAGES=en_US.UTF-8
## [7] LC_PAPER=en_US.UTF-8 LC_NAME=C LC_ADDRESS=C
## [10] LC_TELEPHONE=C LC_MEASUREMENT=en_US.UTF-8 LC_IDENTIFICATION=C
##
## attached base packages:
## [1] stats4 parallel methods stats graphics grDevices utils datasets base
##
## other attached packages:
## [1] ape_5.1 ggplot2_2.2.1 systemPipeR_1.12.0
## [4] ShortRead_1.36.1 GenomicAlignments_1.14.0 SummarizedExperiment_1.8.0
## [7] DelayedArray_0.4.0 matrixStats_0.52.2 Biobase_2.38.0
## [10] BiocParallel_1.12.0 Rsamtools_1.30.0 Biostrings_2.46.0
## [13] XVector_0.18.0 GenomicRanges_1.30.3 GenomeInfoDb_1.14.0
## [16] IRanges_2.12.0 S4Vectors_0.16.0 BiocGenerics_0.24.0
## [19] BiocStyle_2.6.1
##
## loaded via a namespace (and not attached):
## [1] nlme_3.1-137 Category_2.44.0 bitops_1.0-6 bit64_0.9-7
## [5] RColorBrewer_1.1-2 progress_1.1.2 rprojroot_1.3-2 Rgraphviz_2.22.0
## [9] tools_3.4.4 backports_1.1.1 R6_2.2.2 DBI_0.7
## [13] lazyeval_0.2.1 colorspace_1.3-2 prettyunits_1.0.2 RMySQL_0.10.13
## [17] bit_1.1-12 compiler_3.4.4 sendmailR_1.2-1 graph_1.56.0
## [21] rtracklayer_1.38.3 scales_0.5.0 checkmate_1.8.5 BatchJobs_1.6
## [25] genefilter_1.60.0 RBGL_1.54.0 stringr_1.2.0 digest_0.6.12
## [29] rmarkdown_1.9 AnnotationForge_1.20.0 base64enc_0.1-3 pkgconfig_2.0.1
## [33] htmltools_0.3.6 limma_3.34.0 rlang_0.2.0 RSQLite_2.0
## [37] BBmisc_1.11 GOstats_2.44.0 hwriter_1.3.2 RCurl_1.95-4.8
## [41] magrittr_1.5 GO.db_3.4.2 GenomeInfoDbData_0.99.1 Matrix_1.2-14
## [45] Rcpp_0.12.13 munsell_0.4.3 stringi_1.1.5 yaml_2.1.14
## [49] edgeR_3.20.1 zlibbioc_1.24.0 fail_1.3 plyr_1.8.4
## [53] grid_3.4.4 blob_1.1.0 lattice_0.20-35 splines_3.4.4
## [57] GenomicFeatures_1.30.0 annotate_1.56.0 locfit_1.5-9.1 knitr_1.20
## [61] pillar_1.2.1 rjson_0.2.15 codetools_0.2-15 biomaRt_2.34.0
## [65] XML_3.98-1.9 evaluate_0.10.1 latticeExtra_0.6-28 gtable_0.2.0
## [69] assertthat_0.2.0 xtable_1.8-2 survival_2.42-3 tibble_1.4.2
## [73] pheatmap_1.0.8 AnnotationDbi_1.40.0 memoise_1.1.0 brew_1.0-6
## [77] GSEABase_1.40.0
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