Thomas Girke
Thomas Girke is a professor at the University of California, Riverside, working at the intersection of genome biology, chemical genomics, and bioinformatics. His research focuses on the development of computational methods and open-source software for the analysis of large-scale omics and small-molecule bioactivity data, with applications in both basic and translational research. A major emphasis of his work is the design of reproducible and scalable data analysis infrastructure for the R and Bioconductor ecosystems.
Research Interests
Research in the Girke lab focuses on genome biology, chemical genomics, computational biology, and data-driven approaches for studying complex biological systems. Current work includes method and software development for large-scale omics data, chemical genomics, reproducible workflow systems, and translational applications in agriculture and human health. Additional information and project summaries are available on the Projects page.
Education and Training
- Ph.D. in Computational Molecular Biology and Biochemistry, University of Hamburg, Germany
- Postdoctoral training in Genomics and Bioinformatics, Michigan State University
Software and Resources
A major component of Thomas Girke’s work is the development of open-source software and data analysis infrastructure, particularly in the R and Bioconductor communities. This includes contributions to workflow systems, bioinformatics tools, and teaching resources designed to support reproducible research and scalable data analysis.
Publications
Selected publications and a full list of research articles are available on the Publications page.
Biosketch
Contact
See here