Overview
Introduction
Syllabus
Schedule
Schedule
Slides
Tutorials
Assignments
Links
Data Analysis
Short Read Alignments
All Slides
Foundations
S1: Course Introduction
S2: Linux and HPC
S3: Git and GitHub
S4: DNA Sequencing
R Programming
Introduction to R
Programming in R
R on HPC
Graphics in R
Tidyverse & SQLite
Building R Packages
Data Analysis
Sequence Alignments
Multiple Alignments
Short Read Alignments
NGS Analysis Basics
Gene Expression
NGS Workflows
Cluster Analysis
Enrichment Analysis
ChIP-Seq
VAR-Seq
Data Analysis
Short Read Alignments
Short Read Alignments
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Multiple Alignments
NGS Analysis Basics