Overview
Introduction
Syllabus
Schedule
Schedule
Slides
Tutorials
Assignments
Links
NGS Analysis
S13 — NGS Analysis Basics
All Slides
Foundations
S1 — Course Introduction
S2 — Genome Basics
S3 — Databases & Software
S4 — Git and GitHub
S5 — Linux Cluster
S6 — DNA Sequencing
R Programming
S7 — Introduction to R
S9 — Programming in R
S12 — R on HPC
S21 — Graphics in R
S22 — Tidyverse & SQLite
S23 — Building R Packages
NGS Analysis
S8 — Sequence Alignments
S10 — Multiple Alignments
S11 — Short Read Alignments
S13 — NGS Analysis Basics
S14 — Gene Expression
S15 — NGS Workflows
S16 — Cluster Analysis
S17 — Enrichment Analysis
S18 — ChIP-Seq
S19 — VAR-Seq
NGS Analysis
S13 — NGS Analysis Basics
S13 — NGS Analysis Basics
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S11 — Short Read Alignments
S14 — Gene Expression