Girke Lab Research and Teaching Site

Ergude Bao

image

Postition

Graduate student in PhD program of Department of Computer Science & Engineering, UC Riverside

Email

baoe@cs.ucr.edu

Education

  • PhD, Department of Computer Science and Engineering, University of California, Riverside, 2009-2014 (GPA: 3.95/4.00; expected)
  • ME, School of Software Engineering, Beijing Jiaotong University, China, 2006-2009 (Rank: 2/96)
  • BE, School of Computer and Information Technology, Beijing Jiaotong University, China, 2002-2006
  • Visiting Student, Group of Advanced Microsystems, Institute of Computing Technology, Chinese Academy of Sciences, 2007-2009

Research Interests

I am interested in algorithm design for biological data. I also have a little research experience in algorithm design on parallel computer system architectures.

Publications

  • Molecular Biology (ISMB’14). 2014. (Acceptance Ratio: 40/204 = 19.6%); Also Appears in Bioinformatics. 2014 (To Appear)
  • Ergude Bao, Tao Jiang, and Thomas Girke. BRANCH: Boosting RNA-Seq Assemblies with Partial or Related Genome Sequences. Bioinformatics. 2013
  • Ergude Bao, Tao Jiang, and Thomas Girke. SEED: Clustering Next Generation Sequences. Bioinformatics. 2011
  • Ergude Bao, Weisheng Li, Dongrui Fan, Yang Yang, and Xiaoyu Ma. An Optimization of Broadcast on Godson-T Many-Core System Architecture. Journal of Computer Research and Development (CRAD). 2009
  • Ergude Bao, Yang Yang, Hui Chen, Yuanyuan Lu, Xiao Liu, and Weisheng Li. A Study and Implementation of Self-Adaptive Allocation Algorithm for Parallel Program. Proceedings of the 5th International Conference on Soft Computing as Transdisciplinary Science and Technology (ICSTST’08). 2008
  • Ergude Bao and Weisheng Li. A Study and Implementation of the Huffman Algorithm Based on Condensed Huffman Table. Journal of Microelectronics & Computer. 2007
  • Hagop S. Atamian, Ritu Chaudhary, Valeriano Dal Cin, Ergude Bao, Thomas Girke, and Isgouhi Kaloshian. In Planta Expression or Delivery of Potato Aphid Macrosiphum euphorbiae EffectorsMe10 and Me23 Enhances Aphid Fecundity. Molecular Plant-Microbe Interactions. 2012

Software

  • SEED: Clustering Next Generation Sequences
  • BRANCH: Boosting RNA-Seq Assemblies with Partial or Related Genome Sequences
  • AlignGraph: Algorithm for Secondary de novo Genome Assembly Guided by Closely Related References