sessionInfo()
## R version 3.6.1 (2019-07-05)
## Platform: x86_64-pc-linux-gnu (64-bit)
## Running under: Pop!_OS 19.04
## 
## Matrix products: default
## BLAS:   /usr/lib/x86_64-linux-gnu/blas/libblas.so.3.8.0
## LAPACK: /usr/lib/x86_64-linux-gnu/lapack/liblapack.so.3.8.0
## 
## locale:
##  [1] LC_CTYPE=en_US.UTF-8       LC_NUMERIC=C              
##  [3] LC_TIME=en_US.UTF-8        LC_COLLATE=en_US.UTF-8    
##  [5] LC_MONETARY=en_US.UTF-8    LC_MESSAGES=en_US.UTF-8   
##  [7] LC_PAPER=en_US.UTF-8       LC_NAME=C                 
##  [9] LC_ADDRESS=C               LC_TELEPHONE=C            
## [11] LC_MEASUREMENT=en_US.UTF-8 LC_IDENTIFICATION=C       
## 
## attached base packages:
## [1] stats4    parallel  stats     graphics  grDevices
## [6] utils     datasets  methods   base     
## 
## other attached packages:
##  [1] systemPipeR_1.21.0          ShortRead_1.44.0           
##  [3] GenomicAlignments_1.22.1    SummarizedExperiment_1.16.0
##  [5] DelayedArray_0.12.0         matrixStats_0.55.0         
##  [7] Biobase_2.46.0              BiocParallel_1.20.0        
##  [9] Rsamtools_2.2.1             Biostrings_2.54.0          
## [11] XVector_0.26.0              GenomicRanges_1.38.0       
## [13] GenomeInfoDb_1.22.0         IRanges_2.20.1             
## [15] S4Vectors_0.24.0            BiocGenerics_0.32.0        
## [17] BiocStyle_2.14.0           
## 
## loaded via a namespace (and not attached):
##  [1] Category_2.52.1          bitops_1.0-6            
##  [3] bit64_0.9-7              RColorBrewer_1.1-2      
##  [5] progress_1.2.2           httr_1.4.1              
##  [7] Rgraphviz_2.30.0         tools_3.6.1             
##  [9] backports_1.1.5          R6_2.4.1                
## [11] DBI_1.0.0                lazyeval_0.2.2          
## [13] colorspace_1.4-1         withr_2.1.2             
## [15] tidyselect_0.2.5         prettyunits_1.0.2       
## [17] bit_1.1-14               curl_4.2                
## [19] compiler_3.6.1           graph_1.64.0            
## [21] formatR_1.7              rtracklayer_1.46.0      
## [23] bookdown_0.15            checkmate_1.9.4         
## [25] scales_1.1.0             genefilter_1.68.0       
## [27] RBGL_1.62.1              askpass_1.1             
## [29] rappdirs_0.3.1           stringr_1.4.0           
## [31] digest_0.6.22            rmarkdown_1.17          
## [33] AnnotationForge_1.28.0   pkgconfig_2.0.3         
## [35] htmltools_0.4.0          BSgenome_1.54.0         
## [37] dbplyr_1.4.2             limma_3.42.0            
## [39] rlang_0.4.1              RSQLite_2.1.2           
## [41] GOstats_2.52.0           hwriter_1.3.2           
## [43] dplyr_0.8.3              VariantAnnotation_1.32.0
## [45] RCurl_1.95-4.12          magrittr_1.5            
## [47] GO.db_3.10.0             GenomeInfoDbData_1.2.2  
## [49] Matrix_1.2-17            Rcpp_1.0.3              
## [51] munsell_0.5.0            lifecycle_0.1.0         
## [53] stringi_1.4.3            yaml_2.2.0              
## [55] edgeR_3.28.0             zlibbioc_1.32.0         
## [57] BiocFileCache_1.10.2     grid_3.6.1              
## [59] blob_1.2.0               crayon_1.3.4            
## [61] lattice_0.20-38          splines_3.6.1           
## [63] GenomicFeatures_1.38.0   annotate_1.64.0         
## [65] hms_0.5.2                batchtools_0.9.11       
## [67] locfit_1.5-9.1           zeallot_0.1.0           
## [69] knitr_1.26               pillar_1.4.2            
## [71] rjson_0.2.20             base64url_1.4           
## [73] codetools_0.2-16         biomaRt_2.42.0          
## [75] XML_3.98-1.20            glue_1.3.1              
## [77] evaluate_0.14            latticeExtra_0.6-28     
## [79] data.table_1.12.6        BiocManager_1.30.10     
## [81] vctrs_0.2.0              gtable_0.3.0            
## [83] openssl_1.4.1            purrr_0.3.3             
## [85] assertthat_0.2.1         ggplot2_3.2.1           
## [87] xfun_0.11                xtable_1.8-4            
## [89] survival_2.44-1.1        pheatmap_1.0.12         
## [91] tibble_2.1.3             AnnotationDbi_1.48.0    
## [93] memoise_1.1.0            brew_1.0-6              
## [95] GSEABase_1.48.0



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