sessionInfo()
## R version 3.6.1 (2019-07-05)
## Platform: x86_64-pc-linux-gnu (64-bit)
## Running under: Pop!_OS 19.04
## 
## Matrix products: default
## BLAS:   /usr/lib/x86_64-linux-gnu/blas/libblas.so.3.8.0
## LAPACK: /usr/lib/x86_64-linux-gnu/lapack/liblapack.so.3.8.0
## 
## locale:
##  [1] LC_CTYPE=en_US.UTF-8       LC_NUMERIC=C              
##  [3] LC_TIME=en_US.UTF-8        LC_COLLATE=en_US.UTF-8    
##  [5] LC_MONETARY=en_US.UTF-8    LC_MESSAGES=en_US.UTF-8   
##  [7] LC_PAPER=en_US.UTF-8       LC_NAME=C                 
##  [9] LC_ADDRESS=C               LC_TELEPHONE=C            
## [11] LC_MEASUREMENT=en_US.UTF-8 LC_IDENTIFICATION=C       
## 
## attached base packages:
## [1] stats4    parallel  stats     graphics  grDevices utils     datasets 
## [8] methods   base     
## 
## other attached packages:
##  [1] DESeq2_1.26.0               batchtools_0.9.11          
##  [3] data.table_1.12.6           ape_5.3                    
##  [5] ggplot2_3.2.1               systemPipeR_1.21.0         
##  [7] ShortRead_1.44.0            GenomicAlignments_1.22.1   
##  [9] SummarizedExperiment_1.16.0 DelayedArray_0.12.0        
## [11] matrixStats_0.55.0          Biobase_2.46.0             
## [13] BiocParallel_1.20.0         Rsamtools_2.2.1            
## [15] Biostrings_2.54.0           XVector_0.26.0             
## [17] GenomicRanges_1.38.0        GenomeInfoDb_1.22.0        
## [19] IRanges_2.20.1              S4Vectors_0.24.0           
## [21] BiocGenerics_0.32.0         BiocStyle_2.14.0           
## 
## loaded via a namespace (and not attached):
##   [1] colorspace_1.4-1         rjson_0.2.20             hwriter_1.3.2           
##   [4] htmlTable_1.13.2         base64enc_0.1-3          rstudioapi_0.10         
##   [7] farver_2.0.1             bit64_0.9-7              AnnotationDbi_1.48.0    
##  [10] codetools_0.2-16         splines_3.6.1            geneplotter_1.64.0      
##  [13] knitr_1.26               zeallot_0.1.0            Formula_1.2-3           
##  [16] annotate_1.64.0          cluster_2.1.0            GO.db_3.10.0            
##  [19] dbplyr_1.4.2             pheatmap_1.0.12          graph_1.64.0            
##  [22] BiocManager_1.30.10      compiler_3.6.1           httr_1.4.1              
##  [25] GOstats_2.52.0           backports_1.1.5          assertthat_0.2.1        
##  [28] Matrix_1.2-17            lazyeval_0.2.2           limma_3.42.0            
##  [31] formatR_1.7              acepack_1.4.1            htmltools_0.4.0         
##  [34] prettyunits_1.0.2        tools_3.6.1              gtable_0.3.0            
##  [37] glue_1.3.1               GenomeInfoDbData_1.2.2   Category_2.52.1         
##  [40] dplyr_0.8.3              rappdirs_0.3.1           Rcpp_1.0.3              
##  [43] vctrs_0.2.0              nlme_3.1-141             rtracklayer_1.46.0      
##  [46] xfun_0.11                stringr_1.4.0            lifecycle_0.1.0         
##  [49] XML_3.98-1.20            edgeR_3.28.0             zlibbioc_1.32.0         
##  [52] scales_1.1.0             BSgenome_1.54.0          VariantAnnotation_1.32.0
##  [55] hms_0.5.2                RBGL_1.62.1              RColorBrewer_1.1-2      
##  [58] yaml_2.2.0               curl_4.2                 gridExtra_2.3           
##  [61] memoise_1.1.0            rpart_4.1-15             biomaRt_2.42.0          
##  [64] latticeExtra_0.6-28      stringi_1.4.3            RSQLite_2.1.2           
##  [67] genefilter_1.68.0        checkmate_1.9.4          GenomicFeatures_1.38.0  
##  [70] rlang_0.4.1              pkgconfig_2.0.3          bitops_1.0-6            
##  [73] evaluate_0.14            lattice_0.20-38          purrr_0.3.3             
##  [76] labeling_0.3             htmlwidgets_1.5.1        bit_1.1-14              
##  [79] tidyselect_0.2.5         GSEABase_1.48.0          AnnotationForge_1.28.0  
##  [82] magrittr_1.5             bookdown_0.15            R6_2.4.1                
##  [85] Hmisc_4.3-0              base64url_1.4            DBI_1.0.0               
##  [88] foreign_0.8-72           pillar_1.4.2             withr_2.1.2             
##  [91] nnet_7.3-12              survival_2.44-1.1        RCurl_1.95-4.12         
##  [94] tibble_2.1.3             crayon_1.3.4             BiocFileCache_1.10.2    
##  [97] rmarkdown_1.17           progress_1.2.2           locfit_1.5-9.1          
## [100] grid_3.6.1               blob_1.2.0               Rgraphviz_2.30.0        
## [103] digest_0.6.22            xtable_1.8-4             brew_1.0-6              
## [106] openssl_1.4.1            munsell_0.5.0            askpass_1.1



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