sessionInfo()
## R version 3.6.1 (2019-07-05)
## Platform: x86_64-pc-linux-gnu (64-bit)
## Running under: Pop!_OS 19.04
## 
## Matrix products: default
## BLAS:   /usr/lib/x86_64-linux-gnu/blas/libblas.so.3.8.0
## LAPACK: /usr/lib/x86_64-linux-gnu/lapack/liblapack.so.3.8.0
## 
## locale:
##  [1] LC_CTYPE=en_US.UTF-8       LC_NUMERIC=C              
##  [3] LC_TIME=en_US.UTF-8        LC_COLLATE=en_US.UTF-8    
##  [5] LC_MONETARY=en_US.UTF-8    LC_MESSAGES=en_US.UTF-8   
##  [7] LC_PAPER=en_US.UTF-8       LC_NAME=C                 
##  [9] LC_ADDRESS=C               LC_TELEPHONE=C            
## [11] LC_MEASUREMENT=en_US.UTF-8 LC_IDENTIFICATION=C       
## 
## attached base packages:
## [1] stats4    parallel  stats     graphics  grDevices
## [6] utils     datasets  methods   base     
## 
## other attached packages:
##  [1] batchtools_0.9.11           data.table_1.12.6          
##  [3] ape_5.3                     ggplot2_3.2.1              
##  [5] systemPipeR_1.21.0          ShortRead_1.44.0           
##  [7] GenomicAlignments_1.22.1    SummarizedExperiment_1.16.0
##  [9] DelayedArray_0.12.0         matrixStats_0.55.0         
## [11] Biobase_2.46.0              BiocParallel_1.20.0        
## [13] Rsamtools_2.2.1             Biostrings_2.54.0          
## [15] XVector_0.26.0              GenomicRanges_1.38.0       
## [17] GenomeInfoDb_1.22.0         IRanges_2.20.1             
## [19] S4Vectors_0.24.0            BiocGenerics_0.32.0        
## [21] BiocStyle_2.14.0           
## 
## loaded via a namespace (and not attached):
##  [1] nlme_3.1-141             Category_2.52.1         
##  [3] bitops_1.0-6             bit64_0.9-7             
##  [5] RColorBrewer_1.1-2       progress_1.2.2          
##  [7] httr_1.4.1               Rgraphviz_2.30.0        
##  [9] tools_3.6.1              backports_1.1.5         
## [11] R6_2.4.1                 DBI_1.0.0               
## [13] lazyeval_0.2.2           colorspace_1.4-1        
## [15] withr_2.1.2              tidyselect_0.2.5        
## [17] prettyunits_1.0.2        bit_1.1-14              
## [19] curl_4.2                 compiler_3.6.1          
## [21] graph_1.64.0             formatR_1.7             
## [23] rtracklayer_1.46.0       bookdown_0.15           
## [25] checkmate_1.9.4          scales_1.1.0            
## [27] genefilter_1.68.0        RBGL_1.62.1             
## [29] askpass_1.1              rappdirs_0.3.1          
## [31] stringr_1.4.0            digest_0.6.22           
## [33] rmarkdown_1.17           AnnotationForge_1.28.0  
## [35] pkgconfig_2.0.3          htmltools_0.4.0         
## [37] BSgenome_1.54.0          dbplyr_1.4.2            
## [39] limma_3.42.0             rlang_0.4.1             
## [41] RSQLite_2.1.2            GOstats_2.52.0          
## [43] hwriter_1.3.2            dplyr_0.8.3             
## [45] VariantAnnotation_1.32.0 RCurl_1.95-4.12         
## [47] magrittr_1.5             GO.db_3.10.0            
## [49] GenomeInfoDbData_1.2.2   Matrix_1.2-17           
## [51] Rcpp_1.0.3               munsell_0.5.0           
## [53] lifecycle_0.1.0          stringi_1.4.3           
## [55] yaml_2.2.0               edgeR_3.28.0            
## [57] zlibbioc_1.32.0          BiocFileCache_1.10.2    
## [59] grid_3.6.1               blob_1.2.0              
## [61] crayon_1.3.4             lattice_0.20-38         
## [63] splines_3.6.1            GenomicFeatures_1.38.0  
## [65] annotate_1.64.0          hms_0.5.2               
## [67] locfit_1.5-9.1           zeallot_0.1.0           
## [69] knitr_1.26               pillar_1.4.2            
## [71] rjson_0.2.20             base64url_1.4           
## [73] codetools_0.2-16         biomaRt_2.42.0          
## [75] XML_3.98-1.20            glue_1.3.1              
## [77] evaluate_0.14            latticeExtra_0.6-28     
## [79] BiocManager_1.30.10      vctrs_0.2.0             
## [81] gtable_0.3.0             openssl_1.4.1           
## [83] purrr_0.3.3              assertthat_0.2.1        
## [85] xfun_0.11                xtable_1.8-4            
## [87] survival_2.44-1.1        pheatmap_1.0.12         
## [89] tibble_2.1.3             AnnotationDbi_1.48.0    
## [91] memoise_1.1.0            brew_1.0-6              
## [93] GSEABase_1.48.0



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