sessionInfo()
## R Under development (unstable) (2020-03-31 r78116)
## Platform: x86_64-pc-linux-gnu (64-bit)
## Running under: Ubuntu 20.04 LTS
## 
## Matrix products: default
## BLAS:   /usr/local/lib/R/lib/libRblas.so
## LAPACK: /usr/local/lib/R/lib/libRlapack.so
## 
## locale:
##  [1] LC_CTYPE=en_US.UTF-8       LC_NUMERIC=C              
##  [3] LC_TIME=en_US.UTF-8        LC_COLLATE=en_US.UTF-8    
##  [5] LC_MONETARY=en_US.UTF-8    LC_MESSAGES=en_US.UTF-8   
##  [7] LC_PAPER=en_US.UTF-8       LC_NAME=C                 
##  [9] LC_ADDRESS=C               LC_TELEPHONE=C            
## [11] LC_MEASUREMENT=en_US.UTF-8 LC_IDENTIFICATION=C       
## 
## attached base packages:
## [1] stats4    parallel  stats     graphics  grDevices
## [6] utils     datasets  methods   base     
## 
## other attached packages:
##  [1] systemPipeR_1.21.6          ShortRead_1.45.4           
##  [3] GenomicAlignments_1.23.2    SummarizedExperiment_1.17.5
##  [5] DelayedArray_0.13.12        matrixStats_0.56.0         
##  [7] Biobase_2.47.3              BiocParallel_1.21.2        
##  [9] Rsamtools_2.3.7             Biostrings_2.55.7          
## [11] XVector_0.27.2              GenomicRanges_1.39.3       
## [13] GenomeInfoDb_1.23.16        IRanges_2.21.8             
## [15] S4Vectors_0.25.15           BiocGenerics_0.33.3        
## [17] BiocStyle_2.15.6           
## 
## loaded via a namespace (and not attached):
##  [1] colorspace_1.4-1         rjson_0.2.20            
##  [3] hwriter_1.3.2            ellipsis_0.3.0          
##  [5] bit64_0.9-7              AnnotationDbi_1.49.1    
##  [7] fansi_0.4.1              codetools_0.2-16        
##  [9] splines_4.1.0            knitr_1.28              
## [11] annotate_1.65.1          GO.db_3.10.0            
## [13] dbplyr_1.4.2             png_0.1-7               
## [15] pheatmap_1.0.12          graph_1.65.2            
## [17] BiocManager_1.30.10      compiler_4.1.0          
## [19] httr_1.4.1               GOstats_2.53.0          
## [21] backports_1.1.6          assertthat_0.2.1        
## [23] Matrix_1.2-18            limma_3.43.6            
## [25] cli_2.0.2                formatR_1.7             
## [27] htmltools_0.4.0          prettyunits_1.1.1       
## [29] tools_4.1.0              gtable_0.3.0            
## [31] glue_1.4.0               GenomeInfoDbData_1.2.2  
## [33] Category_2.53.1          dplyr_0.8.5             
## [35] batchtools_0.9.13        rappdirs_0.3.1          
## [37] Rcpp_1.0.4.6             vctrs_0.2.4             
## [39] rtracklayer_1.47.0       xfun_0.13               
## [41] stringr_1.4.0            lifecycle_0.2.0         
## [43] XML_3.99-0.3             edgeR_3.29.1            
## [45] zlibbioc_1.33.1          scales_1.1.0            
## [47] BSgenome_1.55.4          VariantAnnotation_1.33.4
## [49] hms_0.5.3                RBGL_1.63.1             
## [51] RColorBrewer_1.1-2       yaml_2.2.1              
## [53] curl_4.3                 memoise_1.1.0           
## [55] ggplot2_3.3.0            biomaRt_2.43.5          
## [57] latticeExtra_0.6-29      stringi_1.4.6           
## [59] RSQLite_2.2.0            genefilter_1.69.0       
## [61] checkmate_2.0.0          GenomicFeatures_1.39.7  
## [63] rlang_0.4.5              pkgconfig_2.0.3         
## [65] bitops_1.0-6             evaluate_0.14           
## [67] lattice_0.20-40          purrr_0.3.3             
## [69] bit_1.1-15.2             tidyselect_1.0.0        
## [71] GSEABase_1.49.1          AnnotationForge_1.29.2  
## [73] magrittr_1.5             bookdown_0.18           
## [75] R6_2.4.1                 base64url_1.4           
## [77] DBI_1.1.0                pillar_1.4.3            
## [79] withr_2.1.2              survival_3.1-11         
## [81] RCurl_1.98-1.1           tibble_3.0.0            
## [83] crayon_1.3.4             BiocFileCache_1.11.5    
## [85] rmarkdown_2.1            jpeg_0.1-8.1            
## [87] progress_1.2.2           locfit_1.5-9.4          
## [89] grid_4.1.0               data.table_1.12.8       
## [91] blob_1.2.1               Rgraphviz_2.31.0        
## [93] digest_0.6.25            xtable_1.8-4            
## [95] brew_1.0-6               openssl_1.4.1           
## [97] munsell_0.5.0            askpass_1.1



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