sessionInfo()
## R version 3.4.0 (2017-04-21)
## Platform: x86_64-pc-linux-gnu (64-bit)
## Running under: Ubuntu 14.04.5 LTS
## 
## Matrix products: default
## BLAS: /usr/lib/libblas/libblas.so.3.0
## LAPACK: /usr/lib/lapack/liblapack.so.3.0
## 
## locale:
##  [1] LC_CTYPE=en_US.UTF-8       LC_NUMERIC=C               LC_TIME=en_US.UTF-8       
##  [4] LC_COLLATE=en_US.UTF-8     LC_MONETARY=en_US.UTF-8    LC_MESSAGES=en_US.UTF-8   
##  [7] LC_PAPER=en_US.UTF-8       LC_NAME=C                  LC_ADDRESS=C              
## [10] LC_TELEPHONE=C             LC_MEASUREMENT=en_US.UTF-8 LC_IDENTIFICATION=C       
## 
## attached base packages:
## [1] stats4    parallel  methods   stats     graphics  utils     datasets  grDevices base     
## 
## other attached packages:
##  [1] DESeq2_1.16.0              RcppArmadillo_0.7.800.2.0  Rcpp_0.12.10              
##  [4] ape_4.1                    ggplot2_2.2.1              systemPipeR_1.10.0        
##  [7] RSQLite_1.1-2              DBI_0.6-1                  ShortRead_1.34.0          
## [10] GenomicAlignments_1.12.0   SummarizedExperiment_1.6.0 DelayedArray_0.2.0        
## [13] matrixStats_0.52.2         Biobase_2.36.0             BiocParallel_1.10.0       
## [16] Rsamtools_1.28.0           Biostrings_2.44.0          XVector_0.16.0            
## [19] GenomicRanges_1.28.0       GenomeInfoDb_1.12.0        IRanges_2.10.0            
## [22] S4Vectors_0.14.0           BiocGenerics_0.22.0        BiocStyle_2.4.0           
## 
## loaded via a namespace (and not attached):
##  [1] nlme_3.1-131            Category_2.42.0         bitops_1.0-6            RColorBrewer_1.1-2     
##  [5] rprojroot_1.2           tools_3.4.0             backports_1.0.5         rpart_4.1-11           
##  [9] Hmisc_4.0-2             lazyeval_0.2.0          colorspace_1.3-2        nnet_7.3-12            
## [13] gridExtra_2.2.1         compiler_3.4.0          sendmailR_1.2-1         graph_1.54.0           
## [17] htmlTable_1.9           labeling_0.3            rtracklayer_1.36.0      scales_0.4.1           
## [21] checkmate_1.8.2         BatchJobs_1.6           genefilter_1.58.0       RBGL_1.52.0            
## [25] stringr_1.2.0           digest_0.6.12           foreign_0.8-68          rmarkdown_1.5          
## [29] AnnotationForge_1.18.0  base64enc_0.1-3         htmltools_0.3.5         limma_3.32.0           
## [33] htmlwidgets_0.8         BBmisc_1.11             GOstats_2.42.0          hwriter_1.3.2          
## [37] acepack_1.4.1           RCurl_1.95-4.8          magrittr_1.5            GO.db_3.4.1            
## [41] GenomeInfoDbData_0.99.0 Formula_1.2-1           Matrix_1.2-8            munsell_0.4.3          
## [45] stringi_1.1.5           yaml_2.1.14             edgeR_3.18.0            zlibbioc_1.22.0        
## [49] fail_1.3                plyr_1.8.4              grid_3.4.0              lattice_0.20-35        
## [53] splines_3.4.0           GenomicFeatures_1.28.0  annotate_1.54.0         locfit_1.5-9.1         
## [57] knitr_1.15.1            rjson_0.2.15            codetools_0.2-15        geneplotter_1.54.0     
## [61] biomaRt_2.32.0          XML_3.98-1.6            evaluate_0.10           latticeExtra_0.6-28    
## [65] data.table_1.10.4       gtable_0.2.0            xtable_1.8-2            survival_2.41-3        
## [69] tibble_1.3.0            pheatmap_1.0.8          AnnotationDbi_1.38.0    memoise_1.1.0          
## [73] cluster_2.0.6           brew_1.0-6              GSEABase_1.38.0



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