sessionInfo()
## R version 3.4.0 (2017-04-21)
## Platform: x86_64-pc-linux-gnu (64-bit)
## Running under: Ubuntu 14.04.5 LTS
## 
## Matrix products: default
## BLAS: /usr/lib/libblas/libblas.so.3.0
## LAPACK: /usr/lib/lapack/liblapack.so.3.0
## 
## locale:
##  [1] LC_CTYPE=en_US.UTF-8       LC_NUMERIC=C               LC_TIME=en_US.UTF-8       
##  [4] LC_COLLATE=en_US.UTF-8     LC_MONETARY=en_US.UTF-8    LC_MESSAGES=en_US.UTF-8   
##  [7] LC_PAPER=en_US.UTF-8       LC_NAME=C                  LC_ADDRESS=C              
## [10] LC_TELEPHONE=C             LC_MEASUREMENT=en_US.UTF-8 LC_IDENTIFICATION=C       
## 
## attached base packages:
##  [1] grid      stats4    parallel  methods   stats     graphics  utils     datasets  grDevices
## [10] base     
## 
## other attached packages:
##  [1] GenomicFeatures_1.28.0     AnnotationDbi_1.38.0       rtracklayer_1.36.0        
##  [4] systemPipeR_1.10.0         RSQLite_1.1-2              DBI_0.6-1                 
##  [7] ShortRead_1.34.0           GenomicAlignments_1.12.0   SummarizedExperiment_1.6.0
## [10] DelayedArray_0.2.0         matrixStats_0.52.2         Biobase_2.36.0            
## [13] Rsamtools_1.28.0           GenomicRanges_1.28.0       GenomeInfoDb_1.12.0       
## [16] BiocParallel_1.10.0        seqLogo_1.42.0             Biostrings_2.44.0         
## [19] XVector_0.16.0             IRanges_2.10.0             S4Vectors_0.14.0          
## [22] BiocGenerics_0.22.0        ggplot2_2.2.1              limma_3.32.0              
## [25] BiocStyle_2.4.0           
## 
## loaded via a namespace (and not attached):
##  [1] edgeR_3.18.0            splines_3.4.0           latticeExtra_0.6-28     RBGL_1.52.0            
##  [5] GenomeInfoDbData_0.99.0 yaml_2.1.14             Category_2.42.0         backports_1.0.5        
##  [9] lattice_0.20-35         digest_0.6.12           RColorBrewer_1.1-2      checkmate_1.8.2        
## [13] colorspace_1.3-2        htmltools_0.3.5         Matrix_1.2-8            plyr_1.8.4             
## [17] GSEABase_1.38.0         XML_3.98-1.6            pheatmap_1.0.8          biomaRt_2.32.0         
## [21] genefilter_1.58.0       zlibbioc_1.22.0         xtable_1.8-2            GO.db_3.4.1            
## [25] scales_0.4.1            brew_1.0-6              tibble_1.3.0            annotate_1.54.0        
## [29] lazyeval_0.2.0          survival_2.41-3         magrittr_1.5            memoise_1.1.0          
## [33] evaluate_0.10           fail_1.3                hwriter_1.3.2           GOstats_2.42.0         
## [37] graph_1.54.0            tools_3.4.0             BBmisc_1.11             stringr_1.2.0          
## [41] sendmailR_1.2-1         munsell_0.4.3           locfit_1.5-9.1          compiler_3.4.0         
## [45] RCurl_1.95-4.8          rjson_0.2.15            AnnotationForge_1.18.0  labeling_0.3           
## [49] bitops_1.0-6            base64enc_0.1-3         rmarkdown_1.5           codetools_0.2-15       
## [53] gtable_0.2.0            knitr_1.15.1            rprojroot_1.2           stringi_1.1.5          
## [57] BatchJobs_1.6           Rcpp_0.12.10



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